Instructions for updating strategies used in searching thematic areas of the VHL

In view of the annual update carried out in the MeSH vocabulary which is then incorporated into DeCS, as well as changes in other DeCS categories, the need for the revision and update of the search strategies of the thematic areas of the VHL have become crucial. This revision applies both to the strategies that use descriptors as well as to those using hierarchic codes.

To achieve the update of the strategies, the addresses for the two versions of DeCS are available, where consultations using the alphabetical, hierarchic and kwic (keyword in context) indices can be made:

- version 2013 from which the strategies were based: DeCS 2013 Search

- version 2014 from which the strategies must now be based: DeCS 2014 Search

Besides the information available under DeCS News regarding the changes occurred in 2014(DeCS 2014 edition), the link under DeCS previous editions, for the DeCS 2006 edition, contains more detailed information with respect to the important revision of the Public Health category concluded that year, of the descriptors that were modified and eliminated.

In order to update search strategies containing hierarchic codes (or tree numbers), see the MeSH and DeCS Tree number changes taken place between the years 2013 and 2014.

Methodology for updating search strategies

In the DeCS 2014 Search, look for the descriptor in the existing strategy using the Exact Descriptor field, or search the hierarchical code in the existing strategy using the tree index to see if it still exists.

- If it exists, fine;

- If the descriptor is not found, check in the list of changed descriptors and in the list of deleted descriptors on the DeCS 2014 edition news page and update its strategy with the descriptor that replaced (or absorbed) it;

- If the hierarchical code is not found, search for it in the tree index of the DeCS 2013 Search and find out the descriptor to which it used to belong; then search for this descriptor using the option Exact Descriptor at DeCS 2014 Search, to find out if it still exists and, if so, what its valid hierarchical code is.

- Example of a descriptor that suffered hierarchy change:

Anatomic Variation, available until 2013 in the H category - Disciplines and Occupations, H01 subcategory – Anatomy (H01.158.100.045), in 2014 it was moved to the G category – Phenomena and Processes, subcategory, G07 subcategory – Physiological Phenomena. Therefore, since 2014, its hierarchical code is G04.049.

DeCS 2013

DISCIPLINES AND OCCUPATIONS [H]

Natural Science Disciplines [H01]

Biological Science Disciplines [H01.158]

Anatomy [H01.158.100]

Anatomic Variation [H01.158.100.045]

DeCS 2014

PHENOMENA AND PROCESSES [G]

Physical Phenomena [G01] +

Chemical Phenomena [G02] +

Metabolic Phenomena [G03] +

Cell Physiological Phenomena [G04] +

Genetic Phenomena [G05] +

Microbiological Phenomena [G06] +

Physiological Phenomena [G07]

Anatomic Variation [G07.049]

This update should happen in all strategies where this hierarchical codes is used.

- Example of adding hierarchical code and repositioning descriptor in the hierarchy:

Descriptor Estivation:

DeCS 2013

PHENOMENA AND PROCESSES [G]

Physiological Phenomena [G07]

Physiological Processes [G07.700]

Adaptation, Physiological [G07.700.062]

Acclimatization [G07.700.062.133]

Estivation [G07.700.062.415]

Hibernation [G07.700.062.592]

Salt-Tolerance [G07.700.062.796]

PHENOMENA AND PROCESSES [G]

Biological Phenomena [G16]

Biological Processes [G16.100]

Adaptation, Biological [G16.100.057]

Adaptation, Physiological [G16.100.057.500]

Acclimatization [G16.100.057.500.133]

Allostasis [G16.100.057.500.274]

Estivation [G16.100.057.500.415]

Hibernation [G16.100.057.500.592]

DeCS 2014

PHENOMENA AND PROCESSES [G]

Physiological Phenomena [G07]

Physiological Processes [G07.700]

Homeostasis [G07.700.345]

Body Temperature Regulation [G07.700.345.421]

Sweating [G07.700.345.421.693]

Thermogenesis [G07.700.345.421.778] +

Torpor [G07.700.345.421.889]

Estivation [G07.700.345.421.889.249]

Hibernation [G07.700.345.421.889.500]

PHENOMENA AND PROCESSES [G]

Physiological Phenomena [G07]

Physiological Processes [G07.700]

Homeostasis [G07.700.345]

Body Temperature Regulation [G07.700.345.421]

Sweating [G07.700.345.421.693]

Thermogenesis [G07.700.345.421.778] +

Torpor [G07.700.345.421.889]

Estivation [G07.700.345.421.889.249]

Hibernation [G07.700.345.421.889.500]

PHENOMENA AND PROCESSES [G]

Biological Phenomena [G16]

Biological Processes [G16.100]

Adaptation, Biological [G16.100.057]

Adaptation, Physiological [G16.100.057.500]

Body Temperature Regulation [G16.100.057.500.535]

Sweating [G16.100.057.500.535.693]

Thermogenesis [G16.100.057.500.535.778] +

Torpor [G16.100.057.500.535.889]

Estivation [G16.100.057.500.535.889.249]

Hibernation [G16.100.057.500.535.889.500]

See below an example of a strategy for Pesticides, valid until 2004 and its updated strategy for 2006:

Before updating:

(ex SP4.405.350.364$ or ex SP8.473.654.412.052.080.115.020.020$ or ex D05.723$ or ex D27.720.723$) or (ti Pesticide$ or ti Plaguicida$ or ti Praguicida$) [Subject descriptor]

Updating that was made:

SP4.405.350.364

This hierarchic code which in 2004 corresponded to the Pesticides descriptor in SP4 (Environmental Health) was modified. The new 2006 hierarchic code for the descriptor in the SP4 (Environmental Health) category is: SP4.001.022.238.

Explode, truncation

The "ex" (from explode) that precedes the hierarchic code and the “$" sign (truncation), indicate that the Pesticides descriptor and all its more specific descriptors will be included in the recovery of literature.

SP8.473.654.412.052.080.115.020.020

This hierarchic code, that continues to exist, also belongs to the Pesticides descriptor since, being DeCS polyhierarchical, a descriptor can be located in more than one of its categories/subcategories. It is not necessary to again include in the strategy this descriptor or the other hierarchic branch where the descriptor is found, because it is already also duly contemplated in SP4.001.022.238.

Unnecessary truncation

Another detail for the elaboration of the strategies is that when a hierarchic code of a descriptor is used under which there is no other more specific descriptor, it is unnecessary to follow it with the “$” sign

D05.723

This hierarchic code does no longer appear in version 2004 of DeCS, since the D05 subcategory of MeSH was eliminated in 2004. Its content was transferred to the D27.888 subcategory. In 2005 the D05 subcategory was recreated by MeSH but with other content: Macromolecular Substances.

Title words

The words of the title continue in the search strategy expression without alterations.

Pesticides [D27.720.723] and Pesticides [D27.888.723]

These hierarchic branches are almost identical, except for the descriptor Pesticide Residues, present in the D27.888.723 branch and absent in the D27.720.723 branch

One should remember that the same descriptor can be inserted in different hierarchies in the DeCS tree, with variations in the specific descriptors. If it is necessary to consider different specific descriptors, the different hierarchic branches can be included in the strategy

Final recommendation

Thus, contemplating all the existing specific descriptors in the various hierarchic branches where the descriptor Pesticides is inserted, the new search strategy must be as follows:

(ex SP4.001.022.238$ or ex D27.888.723$) [Subject descriptor] or (ti Pesticide$ or ti Plaguicida$ or ti Praguicida$) [Title words]

The hierarchical branches cited in the example above, in the two versions of DeCS:

DeCS 2004:

Pesticides [D27.720.723]
Chemosterilants [D27.720.723.141]
            Fungicides, Industrial [D27.720.723.288]
            Herbicides [D27.720.723.366]
               Defoliants, Chemical [D27.720.723.366.181]
               Herbicides, Carbamate [D27.720.723.366.448]
               Herbicides, Triazine [D27.720.723.366.477]
               Herbicides, Urea [D27.720.723.366.506]
            Insect Repellents [D27.720.723.441]
            Insecticides [D27.720.723.491]
               Insecticides, Botanical [D27.720.723.491.324]
               Insecticides, Carbamate [D27.720.723.491.408]
               Insecticides, Organochlorine [D27.720.723.491.491]
               Insecticides, Organophosphate [D27.720.723.491.574]
               Insecticides, Organothiophosphate [D27.720.723.491.657]
Molluscacides [D27.720.723.596]
            Pesticide Synergists [D27.720.723.748]
            Rodenticides [D27.720.723.853]

Pesticides [D27.888.723]
Chemosterilants [D27.888.723.141]
             Fungicides, Industrial [D27.888.723.288]
             Herbicides [D27.888.723.366]
                Defoliants, Chemical [D27.888.723.366.181]
                Herbicides, Carbamate [D27.888.723.366.448]
                Herbicides, Triazine [D27.888.723.366.477]
                Herbicides, Urea [D27.888.723.366.506]
             Insect Repellents [D27.888.723.441]
             Insecticides [D27.720.723.491]
                Insecticides, Botanical [D27.720.723.491.324]
                Insecticides, Carbamate [D27.720.723.491.408]
                Insecticides, Organochlorine [D27.720.723.491.491]
                Insecticides, Organophosphate [D27.720.723.491.574]
                Insecticides, Organothiophosphate [D27.720.723.491.657]
Molluscacides [D27.888.723.596]
             Pesticide Residues [D27.888.723.697]
             Pesticide Synergists [D27.888.723.748]
             Rodenticides [D27.888.723.853]

Pesticides [SP4.405.350.364]
Algicides [SP4.405.350.364.204]
                  Bactericides [SP4.405.350.364.205]
                     Bacteriophages [SP4.405.350.364.205.410]
                  Fungicides, Industrial [SP4.405.350.364.206]
                  Herbicides [SP4.405.350.364.207]
                  Pesticide Utilization [SP4.405.350.364.309]

Pesticides [SP8.473.654.412.052.080.115.020.020]

DeCS 2006:

Pesticides [D27.720.723]
Chemosterilants [D27.720.723.141]
             Fungicides, Industrial [D27.720.723.288]
             Herbicides [D27.720.723.366]
                Defoliants, Chemical [D27.720.723.366.181]
             Insect Repellents [D27.720.723.441]
             Insecticides [D27.720.723.491]
Molluscacides [D27.720.723.596]
             Pesticide Synergists [D27.720.723.748]
             Rodenticides [D27.720.723.853]

Pesticides [D27.888.723]
Chemosterilants [D27.888.723.141]
             Fungicides, Industrial [D27.888.723.288]
             Herbicides [D27.888.723.366]
                Defoliants, Chemical [D27.888.723.366.181]
             Insect Repellents [D27.888.723.441]
             Insecticides [D27.888.723.491]
Molluscacides [D27.888.723.596]
             Pesticide Residues [D27.888.723.697]
             Pesticide Synergists [D27.888.723.748]
             Rodenticides [D27.888.723.853]

Pesticides [SP4.001.022.238]
               Creosote [SP4.001.022.238.349]
Algicides [SP4.001.022.238.354]
               Bactericides [SP4.001.022.238.359]
               Fungicides, Industrial [SP4.001.022.238.364]
               Herbicides [SP4.001.022.238.369]
               Insect Repellents [SP4.001.022.238.374]
               Rodenticides [SP4.001.022.238.379]
Larvicides [SP4.001.022.238.384]
               Insecticides [SP4.001.022.238.389]
Carbaryl [SP4.001.022.238.389.215]
Carbamates [SP4.001.022.238.389.220]
Carbofuran [SP4.001.022.238.389.225]
                  Insecticides, Organochlorine [SP4.001.022.238.389.230]
Aldrin [SP4.001.022.238.389.230.036]
Chlordan [SP4.001.022.238.389.230.041]
Dichlorodiphenyldichloroethane [SP4.001.022.238.389.230.046]
                     DDT [SP4.001.022.238.389.230.051]
Dieldrin [SP4.001.022.238.389.230.056]
Endrin [SP4.001.022.238.389.230.061]
                     Heptachlor [SP4.001.022.238.389.230.066]
Toxaphene [SP4.001.022.238.389.230.071]
                  Insecticides, Organophosphate [SP4.001.022.238.389.235]
Diazinon [SP4.001.022.238.389.235.076]
                     Malathion [SP4.001.022.238.389.235.081]
                     Parathion [SP4.001.022.238.389.235.086]
                        Methyl Parathion [SP4.001.022.238.389.235.086.022]

Pesticides [SP8.473.654.412.052.080.115.020.020]

Updated: March, 2014